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Catalogue 2013-2014 [ARCHIVED CATALOG]
Course Descriptions
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Astronomy: III. Advanced |
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ASTR 300 - Senior Thesis Semester Offered: Fall or Spring
1 unit(s)
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ASTR 301 - Senior Thesis Semester Offered: Fall
1/2 unit(s)
Yearlong course, 301-ASTR 302 .
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ASTR 302 - Senior Thesis Semester Offered: Spring
1/2 unit(s)
Yearlong course, ASTR 301 -302.
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ASTR 320 - Astrophysics of the Interstellar Medium Semester Offered: Spring
1 unit(s)
A study of the observations and theory related to interstellar matter, including masers, protostars, dust, atomic, molecular and ionized gas clouds. Radiative transfer, collapse and expansion processes, shocks and spiral density waves are discussed. Ms. Elmegreen.
Prerequisite(s): one 200-level physics course or one 200-level astronomy course, Junior or Senior status, or permission of the instructor.
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ASTR 340 - Advanced Observational Astronomy Semester Offered: Fall
1 unit(s)
This course applies in depth the methods introduced in ASTR 240 . Students are expected to pursue individual observational projects in collaboration with the instructor. The amount of time spent in the observatory and how it is scheduled depends on the nature of the project, although 1/2 Unit projects require half the total time of full unit projects. Mr. Chromey.
Prerequisite(s): ASTR 240 and permission of the instructor.
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ASTR 399 - Senior Independent Work Semester Offered: Fall or Spring
1/2 or 1 unit(s)
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Athletics and Physical Education: I. Introductory |
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PHED 110 - Introduction to Athletic Injury Care
1 unit(s)
This course exposes students to the techniques necessary both to prevent and also to recognize, treat, and rehabilitate common sports injuries. Anatomy and the function of joints, as well as the spine, groin, head and face injuries, are studied. Hands-on involvement in the course is required. Ms. Finerghty.
Not offered in 2013/14.
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PHED 111 - Weight Training Semester Offered: Fall or Spring
1/2 unit(s)
This course is designed to provide the student with a thorough understanding of strength training and how to develop a lifting program. Students actively participate in the fitness room performing a weight training program based on their individual weight training goals.
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PHED 115 - Triathlon Training Semester Offered: Fall or Spring
1/2 unit(s)
An introduction to the disciplines of swimming, cycling and running in a comprehensive training program which prepares class members to compete in triathlons. Primary topics include strategies for training and designing training programs. Students must have experience in each discipline. Ms. Prater-Lee.
Prerequisite(s): permission of the instructor.
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PHED 125 - Beginning Golf I Semester Offered: Fall or Spring
1/2 unit(s)
The course is designed for individuals with limited or no previous golf experience. The objective of this course is to provide the student with the basic skills of golf. Upon completion of the course the students should be familiar with golf equipment and set make up; have a knowledge of the fundamentals of the golf swing, chipping and putting; have a knowledge of the game of golf and how to play, and have a general understanding of the rules and etiquette of golf.
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PHED 126 - Beginning Golf II Semester Offered: Fall or Spring
1/2 unit(s)
This course is a continuation of PHED 125 for individuals with limited or no previous golf experience. The objective of this course is to provide the student with the basic skills of golf. Upon completion of the course the students should be familiar with golf equipment and set make up; have a knowledge of the fundamentals of the golf swing, chipping and putting; have a knowledge of the game of golf and how to play and have a general understanding of the rules and etiquette of golf.
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PHED 130 - Beginning Badminton Semester Offered: Fall or Spring
1/2 unit(s)
Introduction to the basic overhead and underhand strokes and their use in game situations. Singles and doubles strategy and rules of the game. Designed for the student with no previous instruction in badminton.
Not offered in 2013/14.
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PHED 135 - Flag Football Semester Offered: Spring
1/2 unit(s)
The course is intended to introduce students to the basic concepts, rules, skill, and offensive and defensive strategies of flag football. Skills and strategies are developed and utilized in scrimmage situations.
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PHED 137 - Fundamentals of Soccer Semester Offered: Spring
1/2 unit(s)
This course is designed to teach the basic skills necessary to play soccer. Students learn fundamental techniques and strategies of the game. The course is largely practical, but it also provides theoretical discussion in exercise physiology and biomechanics allowing students to learn the science of soccer.
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PHED 142 - Fencing Fundamentals
1/2 unit(s)
This course is designed to give students an understanding of the three basic weapons (foil, epee, sabre). Body stance and positions, footwork, bladework, basic fencing strategy and tactics, history of the sport and progression from controlled bouting to open fencing is taught. Equipment is provided.
Not offered in 2013/14.
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PHED 144 - Intermediate Fencing
1/2 unit(s)
This course reviews and builds upon the basics of Epee and Sabre and then moves into the tactics and strategy of all three fencing weapons. Fencing rules and proper referencing are discussed in an effort to provide a greater understanding of competitive fencing at all levels of the sport. Equipment is provided.
Prerequisite(s): PHED 142 or permission of the instructor.
Not offered in 2013/14.
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PHED 145 - Volleyball Fundamentals
1/2 unit(s)
This course develops individual skills (passing, setting, spiking, and blocking) as well as offensive and defensive strategies. This course is for students with little or no vollyball experience.
Not offered in 2013/14.
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PHED 147 - Learning the Creator’s Game: Introduction to Lacrosse
1/2 unit(s)
This class is designed to teach new and novice players the basic skills necessary to play lacrosse. Students learn fundamental stick skills, individual and team concepts and general rules of play. The sport is taught in the non-contact mode and sticks are provided. The strategies are applied to both men’s and women’s styles of play. Students also learn the historical and cultural elements of lacrosse as a Native American creation to today’s present game.
Not offered in 2013/14.
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PHED 150 - Beginning Swimming I Semester Offered: Fall and Spring
1/2 unit(s)
The course is intended to develop a physical and mental adjustment to the water in students who have a fear of the water or little or no formal instruction. The course includes the practice of elementary skills applying principles of buoyancy, propulsion, and safety.
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PHED 151 - Beginning Swimming II Semester Offered: Fall and Spring
1/2 unit(s)
The course is designed for students who have the ability to float on front and back and who are comfortable in the water but have limited technical knowledge of strokes.
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PHED 190 - Fundamentals of Conditioning Semester Offered: Fall and Spring
1/2 unit(s)
A course designed to give the student an understanding of fitness, its development and maintenance. Included are units on cardiovascular efficiency, muscle strength, endurance, flexibility, weight control, weight training, and relaxation techniques.
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PHED 191 - Beginning Squash I Semester Offered: Fall and Spring
1/2 unit(s)
An introduction to the basic shots of the game and their use. Introduces the rules and provides basic game situations. Assumes no previous experience or instruction in squash. Ms. Parker.
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PHED 192 - Beginning Squash II Semester Offered: Fall and Spring
1/2 unit(s)
Further development of the basic shots and strategies of the game. Ms. Parker.
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PHED 193 - Beginning Tennis Semester Offered: Fall or Spring
1/2 unit(s)
Introduction of the basic strokes, rules of the game, and match play.
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PHED 197 - Low Intermediate Tennis Semester Offered: Fall and Spring
1/2 unit(s)
Continued work on basic strokes and tactics.
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Athletics and Physical Education: II. Intermediate |
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PHED 210 - Nutrition and Exercise Semester Offered: Spring
1 unit(s)
Students learn about elements that lead to a healthy lifestyle. Nutrition and exercise as a means of disease prevention is discussed. Students also learn about the benefits of exercise and how to develop an exercise plan. The digestion, absorption and biochemical breakdown of food is analyzed. Attention is given to the body’s use of macro and micronutrients. Ms. Finerghty.
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PHED 225 - Intermediate Golf II
1/2 unit(s)
Expectation is that there is some technique with woods and irons and experience playing on a course. The student is put through a thorough analysis of basic swings and develops consistency and accuracy with all clubs. The student is expected to master history, rules of the game, etiquette, and all aspects of tournament play.
Not offered in 2013/14.
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PHED 226 - Intermediate Golf II Semester Offered: Spring
1/2 unit(s)
A continuing development and refinement of all aspects of the game.
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PHED 230 - Intermediate Badminton
1/2 unit(s)
Review and further development of basic strokes and tactics. Instruction in advanced strokes and strategy for singles, doubles, and mixed doubles. Designed for the student with previous badminton experience.
Not offered in 2013/14.
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PHED 245 - Intermediate Volleyball
1/2 unit(s)
Students are expected to master higher levels of setting, spiking, serving, blocking, as well as more complex offensive and defensive strategies.
Not offered in 2013/14.
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PHED 250 - Intermediate Swimming I Semester Offered: Fall or Spring
1/2 unit(s)
Stroke technique and propulsive skill development, primarily focused on freestyle, backstroke, breaststroke, sidestroke, and some butterfly. Ms. Prater-Lee.
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PHED 251 - Intermediate Swimming II
1/2 unit(s)
Further development of swim stroke technique and efficiency. Ms. Prater-Lee.
Not offered in 2013/14.
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PHED 255 - The Psychology of Sport Semester Offered: Fall
1 unit(s)
(Same as PSYC 255 ) This course assesses the factors that influence behaviors related to participation in sports. The relationships of individual differences, attention, arousal, anxiety, and motivation, team cohesion, leadership, and audience effects on sports performance may be addressed. Mr. Bean.
Prerequisite(s): PSYC 105 or PSYC 106 .
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PHED 270 - Intermediate Squash I Semester Offered: Spring
1/2 unit(s)
This course is for the intermediate player who wants to improve and build upon basic technique and tactics. It is designed to continue racquet skills development, variation of pace, deception, offense, defense and knowledge of the rules. Ms. Parker.
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PHED 271 - Intermediate Squash II Semester Offered: Spring
1/2 unit(s)
Review and further development of advanced strokes and strategies. Ms. Parker.
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PHED 272 - Intermediate Tennis I Semester Offered: Fall and Spring
1/2 unit(s)
This class is for the intermediate player who wants to improve and build upon basic technique. The course is designed to continue work on groundstrokes, volleys and serves, as well as develops more specialty shots and strategies. These include topspin, slice, approach shots, overheads and lobs, spin serves, and service returns and singles and doubles strategy.
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PHED 273 - Intermediate Tennis II Semester Offered: Fall and Spring
1/2 unit(s)
Further development of stroke technique, specialty shots and strategies.
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PHED 290 - Field Work
1/2 or 1 unit(s)
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PHED 297 - Reading Course
1/2 unit(s)
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PHED 298 - Independent Work Semester Offered: Fall or Spring
1/2 or 1 unit(s)
Permission granted by the chair of the department for the study of a topic in depth.
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Athletics and Physical Education: III. Advanced |
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PHED 320 - Varsity Athletics Semester Offered: Fall and Spring
1/2 unit(s)
Student must be selected as a varsity team member, or varsity club team member (Rowing and Rugby). A try-out may be necessary. Permission of the appropriate coach is required. May be repeated for credit up to 4 times.
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PHED 378 - Advanced Swimming and Aquatic Conditioning
1/2 unit(s)
This course teaches stroke technique refinement and in-water conditioning and training skills. Goals are to improve lap swimming efficiency and physical conditioning. Ms. Prater-Lee.
Prerequisite(s): satisfactory completion of the Intermediate course, the Red Cross Level V course, or the ability to perform the equivalent swimming skills.
Not offered in 2013/14.
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PHED 379 - Lifeguard Training
1/2 unit(s)
Fulfills the requirements for the American Red Cross lifeguard training course. Provides additional instruction in stroke technique. Ms. Prater-Lee.
Prerequisite(s): proficiency in crawl, and breaststroke; ability to swim 300- yards continuously using 100 yards of front crawl, 100 yards of breaststroke, and 100 -yards of either front crawl or breast stroke. Additionally, student must be able to surface dive to 8 ft. depth, retrieve 10lb. diving brick, and return swim 20-yards holding the diving brick with two hands; permission of the instructor.
300-yard swim and diving brick retrieval are performed on the first day of class. Additional American Red Cross fee required for certification. Not offered in 2013/14.
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PHED 390 - Water Safety Instructor’s Course Semester Offered: Spring
1 unit(s)
Fulfills the requirements for the American Red Cross instructor rating. Includes skill development, stroke analysis, learning progressions, class organization, and practice teaching. Prepares the student to teach basic and emergency water safety, infant and preschool aquatics, and all levels of swimming. Ms. Prater-Lee.
Prerequisite(s): Advanced skill in swimming, Red Cross Lifeguard Training certification or Emergency Water Safety certification, and permission of the instructor.
Note: Additional fee is required to complete the Red Cross certification and to receive academic credit.
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PHED 393 - Advanced Tennis
1/2 unit(s)
Emphasis on advanced strokes, analysis of errors, tactics for singles and doubles.
Prerequisite(s): good ground strokes, serve, and volley.
Not offered in 2013/14.
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PHED 399 - Senior Independent Work
1/2 or 1 unit(s)
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Biochemistry |
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BIOC 290 - Field Work
1/2 or 1 unit(s)
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BIOC 298 - Independent Work
1/2 or 1 unit(s)
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BIOC 377 - Senior Laboratory in Macromolecule Function Semester Offered: Spring
1 unit(s)
A protein and its gene are characterized by chemical modification and site-directed mutagenesis. Coursework includes student presentations and extensive laboratory work. Mr. Eberhardt.
Prerequisite(s): BIOL 324 /CHEM 324 .
Two 4-hour periods.
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BIOC 399 - Senior Independent Work
1/2 or 1 unit(s)
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Biology: I. Introductory |
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BIOL 105 - Introduction to Biological Processes Semester Offered: Fall and Spring
1 unit(s)
Development of critical thought, communication skills, and understanding of central concepts in biology, through exploration of a timely topic. The content of each section varies. The department.
See Freshman handbook for section descriptions.
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BIOL 106 - Introduction to Biological Investigation Semester Offered: Fall and Spring
1 unit(s)
Investigation of biological questions via extended laboratory or field projects. Emphasis is placed on observation skills, development and testing of hypotheses, experimental design, data collection, statistical analysis, and scientific writing and presentation. The department.
One 75-minute period; one 4-hour laboratory.
For freshmen wanting to take Biology 106, a 4 or 5 in AP biology, or a 5 or 6 or 7 in IB Biology, or BIOL 105 is required. Upper class students may take BIOL 105 and 106 in any order, but upper class students who have not taken two years of high school biology are urged to start with BIOL 105 .
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BIOL 141 - Introduction to Statistics Semester Offered: Fall or Spring
1 unit(s)
(Same as MATH 141 ) The purpose of this course is to develop an appreciation and understanding of the exploration and interpretation of data. Topics include display and summary of data, introductory probability, fundamental issues of study design, and inferential methods including confidence interval estimation and hypothesis testing. Applications and examples are drawn from a wide variety of disciplines. When cross-listed with biology, examples will be drawn primarily from biology. Not open to students with AP credit in statistics or students who have completed ECON 209 or PSYC 200 .
Prerequisite(s): three years of high school mathematics.
Not open to students with AP credit in statistics or students who have completed ECON 209 or PSYC 200 .
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BIOL 172 - Microbial Wars
1 unit(s)
(Same as STS 172 ) This course explores our relationship with microbes that cause disease. Topics including bioterrorism, vaccinology, smallpox eradication, influenza pandemics, antibiotic resistance, and emerging diseases are discussed to investigate how human populations are affected by disease, how and why we alter microorganisms intentionally or unintentionally, and how we study disease causing microbes of the past and present. The use of new technologies in microbiology that allow us to turn harmful pathogens into helpful medical or industrial tools are also discussed. Mr. Esteban.
Not offered in 2013/14.
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BIOL 175 - Plants and Plant Communities of the Hudson Valley
1/2 unit(s)
Plants are the most conspicuous components of terrestrial ecosystems. In this course, you learn how to observe and describe variation in plant form so you can recognize locally common plant species and determine their scientific names. You also learn to recognize the characteristic plant communities of the Hudson Valley. This course is structured around weekly field trips to local natural areas. Locations are chosen to illustrate the typical plant species and communities of the region, the ecosystem services provided by plants, environmental concerns, and conservation efforts. This course is appropriate for students interested in biology, environmental science, and environmental studies, and anyone wishing to learn more about our natural environment. Mr. Schlessman.
Two 75-minute periods; one 4-hour laboratory.
First 6-week course.
Not offered in 2013/14.
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BIOL 178 - Special Projects in Biology Semester Offered: Fall or Spring
1/2 unit(s)
Execution and analysis of a laboratory or field study. Project to be arranged with individual instructor. The department.
Open to freshmen and sophomores only.
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Biology: II. Intermediate |
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BIOL 202 - Plant Physiology and Development Semester Offered: Fall
1 unit(s)
An examination of the cellular and physiological bases of plant maintenance, growth, development, and reproduction; with emphasis on the values of different plants as experimental systems. To get a complete introduction to the biology of plants, you should also take BIOL 208 - Plant Diversity and Evolution . Mr. Pregnall.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
Three 50-minute periods; one 4-hour laboratory.
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BIOL 205 - Introduction to Microbiology Semester Offered: Fall
1 unit(s)
An introduction to the world of microbes, including bacteria, fungi, and viruses. The study of bacteria is stressed. Studies of the morphology, physiology, and genetics of bacteria are followed by their consideration in ecology, industry, and medicine. Mr. Esteban.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
Two 75-minute periods; two 2-hour laboratories.
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BIOL 208 - Plant Diversity and Evolution Semester Offered: Spring
1 unit(s)
Plants are critically important for our continued existence on Earth. We are totally dependent on plants for the oxygen we breathe and the food that we eat. We rely heavily on plants for clothing, shelter, and many other essentials. Plants provide us with medicines, poisons, and mind-altering drugs. Plants inspire art, and many plants have become powerful cultural symbols. Thus, biologists, ecologists, environmentalists, anthropologists, and many others want to understand plants. In this course we will examine major events in the evolution of plants and other photosynthetic organisms, including photosynthetic bacteria, and algae. We will focus on their distinctive biological features, their environmental significance, and their value as model organisms for research. Laboratories include observations, experiments, and field trips. This course is appropriate for students majoring in biological sciences or environmental studies, and for those interested in ethnobotany. To get a complete introduction to the biology of plants, you should also take BIOL 202 - Plant Physiology and Development . Mr. Schlessman.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted. BIOL 106 , or ENST 124 , or permission of the instructor prior to registration.
Two 75-minute periods; one 4-hour laboratory.
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BIOL 218 - Cellular Structure and Function
1 unit(s)
An introduction to cell biology, with a focus on subcellular organization in eukaryotes. The regulation and coordination of cellular events, and the specializations associated with a variety of cell types are considered. Topics include organelle function, the cytoskeleton, and mechanisms of cell division. Laboratory work centers on investigations of cell function with an emphasis on biological imaging. Ms. Pokrywka.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
Two 75-minute periods; one 4-hour laboratory.
Not offered in 2013/14.
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BIOL 226 - Animal Structure and Diversity Semester Offered: Spring
1 unit(s)
The members of the animal kingdom are compared and analyzed in a phylogenetic context. Emphasis is placed on the unique innovations and common solutions evolved by different taxonomic groups to solve problems related to feeding, mobility, respiration, and reproduction. Laboratory work centers on the comparative study of the anatomy of species representative of the major animal phyla. The department.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
Two 75-minute periods; one 4-hour laboratory.
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BIOL 228 - Animal Physiology Semester Offered: Fall
1 unit(s)
A comparative examination of the mechanisms that animals use to move, respire, eat, reproduce, sense, and regulate their internal environments. The physiological principles governing these processes, and their ecological and evolutionary consequences, are developed in lecture and applied in the laboratory. Ms. Duncan, Ms. Gall.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
Two 75-minute periods; one 4-hour laboratory.
Recommended: PSYC 200 or MATH 141 ; CHEM 108 , CHEM 109 , and PHYS 113 .
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BIOL 232 - Developmental Biology Semester Offered: Fall
1 unit(s)
The study of embryonic development including gametogenesis, fertilization, growth, and differentiation. Molecular concepts of gene regulation and cell interactions are emphasized. The laboratory emphasizes classical embryology and modern experimental techniques. Mr. Straus.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
Two 75-minute periods; one 4-hour laboratory.
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BIOL 238 - Molecular Genetics Semester Offered: Spring
1 unit(s)
Principles of genetics and methods of genetic analysis at the molecular, cellular, and organismal levels. Emphasis is placed on classical genetic experiments, as well as modern investigative techniques such as recombinant DNA technology, gene therapy, genetic testing, and the use of transgenic plants and animals. Ms. Pokrywka, Ms. Kennell.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
Three 50-minute periods; one 4-hour laboratory.
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BIOL 241 - Ecology Semester Offered: Fall
1 unit(s)
Population growth, species interaction, and community patterns and processes of species or groups of species are discussed. The course emphasizes these interactions within the framework of evolutionary theory. Local habitats and organisms are used as examples of how organisms are distributed in space, how populations grow, why species are adapted to their habitats, how species interact, and how communities change. Field laboratories at Vassar Farm and other localities emphasize the formulation of answerable questions and methods to test hypotheses. Ms. Christenson, Ms. Gall, Ms. Ronsheim.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
Three 50-minute periods; one 4-hour field laboratory.
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BIOL 244 - Genetics and Genomics Semester Offered: Fall
1 unit(s)
From understanding the role of a single gene in a single organism to understanding how species evolve, the field of genomics provides a lens for studying biology at all scales. In this course we develop a foundational understanding of genetics concepts and processes, and then deploy this foundation to probe some of the hottest questions in genomics. How do genomes evolve? What makes us human? How can we combat emerging diseases? In the lab component, students learn molecular biology and bioinformatics techniques, design and engineer a synthetic bio-machine from standard genomic parts, and use genomic approaches to understand how organisms interact with the environment. Ms. Schwarz.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
Two 75-minute periods; one 4-hour laboratory.
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BIOL 248 - Evolutionary Genetics
1 unit(s)
What do wolves, bananas, and staph infections have in common? The link is genetics - conservation genetics, the genetics of domestication, and the genetic changes resulting in antibiotic resistant strains of bacteria. In this course we cover the foundations of evolutionary biology, starting with the genetic principles that underlie the process of evolutionary change and how populations and species respond to evolutionary pressures. Building on this understanding of the genetic mechanisms involved in both micro- and macroevolutionary processes, we can then address the potential for evolutionary responses to environmental change. Ms. Ronsheim.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted. BIOL 106 , or ENST 124 , or permission of the instructor prior to registration.
Two 75-minute periods; one 4-hour laboratory.
Not offered in 2013/14.
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BIOL 254 - Environmental Science in the Field
1 unit(s)
(Same as ESCI 254 , ENST 254 , and GEOG 254 ) The environment consists of complex and often elegant interactions between various constituents so that an interdisciplinary approach is required to understand how human interactions may affect it. In this course, we study a variety of aspects of a specific environment by considering how biological, chemical, geological, and human factors interact. We observe these interactions first hand during a weeklong field trip. Some of the questions we may consider are: How does a coral polyp create an environment that not only suits its particular species, but also helps regulate the global climate? How has human development and associated water demands in the desert Southwest changed the landscape, fire ecology, and even estuary and fisheries’ health as far away as the Gulf of California? How have a variety of species (humans included) managed to survive on an island with the harsh environment of the exposed mid-ocean ridge of Iceland? The course is offered every other year, and topics vary with expertise of the faculty teaching the course.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted. permission of the instructor.
Not offered in 2013/14.
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BIOL 272 - Biochemistry Semester Offered: Spring
0 or 1 unit(s)
(Same as CHEM 272 ) Basic course covering protein structure and synthesis, enzyme action, bio-energetic principles, electron transport and oxidative phosphorylation, selected metabolic pathways in prokaryotic and eukaryotic cells. Mr. Eberhardt, Ms. Garrett, Mr. Jemiolo, Mr. Straus.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted. CHEM 244 .
Three 50-minute periods; one 4-hour laboratory.
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BIOL 275 - Paleontology and the Fossil Record Semester Offered: Fall
1 unit(s)
(Same as ESCI 275 ) Paleontology isn’t just a “dead science”- by studying processes that have occurred in the past, we can deepen our understanding of the current biota inhabiting the Earth. Conversely, by studying the modern distribution of organisms and the environmental, taphonomic, and ecological processes that impact their distribution and preservation, we can enhance our understanding of the processes that have controlled the formation and distribution of fossils through time. In this course, we explore the methodology used to interpret the fossil record, including preservational biases and how we account for them when studying fossil taxa. We also explore large-scale ecological changes and evolutionary processes and discuss how they manifest across geologic time, and how these relate to Earth’s changing fauna. We additionally learn about how paleontology has developed as a field in the context of different historical and social perspectives. Lab exercises focus on applying paleontological methods to a variety of different fossil and recent samples. Ms. Kosloski.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
Two 75-minute periods and one 4-hour laboratory period.
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BIOL 290 - Field Work Semester Offered: Fall or Spring
1/2 or 1 unit(s)
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted.
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BIOL 298 - Independent Work Semester Offered: Fall or Spring
1/2 or 1 unit(s)
Execution and analysis of a field, laboratory, or library study. The project, arranged with an individual instructor, is expected to have a substantial paper as its final product.
Prerequisite(s): Prerequisites for 200-level courses are BIOL 106 and either BIOL 105 , AP Biology with a 4 or 5 AP score, or IB higher level 5, 6 or 7 test score, unless otherwise noted. permission of the instructor.
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Biology: III. Advanced Two units of 200-level biology are prerequisites for entry into 300-level courses; see each course for specific courses required or exceptions. |
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BIOL 303 - Senior Research Semester Offered: Fall or Spring
1 unit(s)
Critical analysis, usually through observation or experimentation, of a specific research problem in biology. A student electing this course must first gain, by submission of a written research proposal, the support of a member of the biology faculty with whom to work out details of a research protocol. The formal research proposal, a final paper, and presentation of results are required parts of the course. A second faculty member participates both in the planning of the research and in final evaluation.
Prerequisite(s): permission of the instructor.
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BIOL 316 - Advanced Topics in Neurobiology
1 unit(s)
A multilevel examination of nervous systems, with particular emphasis on cellular and molecular mechanisms. The course is an advanced, integrative evaluation of current topics in neurobiology. Topics vary but may include ion channel structure/function, mechanisms of synaptic communication, glia, evolution of nervous systems and plasticity. Emphasis is placed on current thinking and research and course material is drawn from the recent primary literature. Ms. Susman.
Prerequisite(s): two units of 200-level biology or one unit of 200-level biology and NEUR 201 .
Two 75-minute periods.
Recommended: BIOL 228 .
Not offered in 2013/14.
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BIOL 323 - Seminar in Cell and Molecular Biology Semester Offered: Spring
1 unit(s)
An intensive study of selected topics at the cellular and subcellular level. Topics vary, but may include organelle structure and function, advanced genetics, and mechanisms of cellular organization. Emphasis is placed on current models, issues, and research areas, and course material is drawn largely from primary literature.
Topic for 2013/14b: Cell Dynamics: The Rainbow Revolution in Living Cells. Our bodies are made up of trillions of cells that function harmoniously together, allowing us to eat, play and sleep. Individual cells are busy factories that orchestrate complex tasks at the right time and place. How do we study the inner workings of a cell when the subcellular activities are invisible to our own eyes? For decades, scientists were limited to studying only “time points” of dynamic cellular processes using light and electron microscopy. The discovery of Green Fluorescent Protein (GFP) from the jellyfish Aequorea victoria was a significant breakthrough in cell biology research. This novel tool provided a platform for scientists to visualize and study spatially- and temporally-regulated subcellular activity at a molecular level in living cells and organisms. Subsequent work led to the development of a “rainbow” of fluorescent proteins that enable multi-color imaging of cell processes. In this course, we investigate the fascinating field of cell dynamics and explore how scientists have utilized fluorescent proteins to study the function and mechanisms of intracellular trafficking, transcription and translation, neuronal development, cell division and stem cells. Class material draws from primary literature and students participate in active discussion and presentations. Students learn modern cell and molecular biology techniques, experimental design, and critical thinking skills. Ms. Kee.
Prerequisite(s): two 200-level courses including one of the following: BIOL 218 , BIOL 238 , BIOL 244 , BIOL 248 , or BIOL 272 .
Two 75-minute periods.
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BIOL 324 - Molecular Biology Semester Offered: Fall
1 unit(s)
(Same as CHEM 324 ) An examination of the macromolecular processes underlying storage, transfer, and expression of genetic information. Topics include the structure, function, and synthesis of DNA; mutation and repair; the chemistry of RNA and protein synthesis; the regulation of gene expression; cancer and oncogenes; the molecular basis of cell differentiation; and genetic engineering. Mr. Jemiolo.
Prerequisite(s): two 200-level courses including one of the following: BIOL 205 , BIOL 218 , , , , or .
Two 75-minute periods.
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BIOL 340 - Experimental Animal Behavior Semester Offered: Fall
1 unit(s)
Examination of the relationship between behavior and the individual animal’s survival and reproductive success in its natural environment. Evolutionary, physiological, and developmental aspects of orientation, communication, foraging, reproductive tactics, and social behavior are considered. Methodology and experimental design are given particular emphasis, and students will complete an independent research project by the end of the semester. The department.
Prerequisite(s): two units of 200-level biology or one unit each of 200-level biology and psychology.
Two 2-hour periods.
Recommended: BIOL 226 , BIOL 228 , BIOL 238 , BIOL 244 , BIOL 248 , NEUR 201 , or PSYC 200 .
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BIOL 352 - Conservation Biology Semester Offered: Fall
1 unit(s)
(Same as ENST 352 ) Conservation Biology uses a multidisciplinary approach to study how to best maintain the earth’s biodiversity and functioning ecosystems. We examine human impacts on biodiversity and ecosystem function and discuss how to develop practical approaches for mitigating those impacts. We start the semester by assessing the current human footprint on global resources, asking questions about what we are trying to preserve, why we are trying to preserve it, and how we can accomplish our goals. We critically examine the assumptions made by conservation biologists throughout, using case studies from around the world to explore a range of perspectives. Discussion topics include conservation in an agricultural context, the efficacy of marine protected areas, the impact of climate change on individual species and preserve design, restoration ecology, the consequences of small population sizes, conservation genetics, the impacts of habitat fragmentation and invasive species, and urbanecology. Ms. Ronsheim.
Recommended: BIOL 241 , BIOL 208 , or BIOL 226 , GEOG 260 , GEOG 224 , or GEOG 356 ; or permission of the instructor.
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BIOL 353 - Bioinformatics Semester Offered: Spring
1 unit(s)
(Same as CMPU 353 ) DNA is the blueprint of life. Although it’s composed of only four nucleotide “letters” (A, C. T, G), the order and arrangement of these letters in a genome gives rise to the diversity of life on earth. Thousands of genomes have been partially sequenced, representing billions of nucleotides. How can we reach this vast expanse of sequence data to find patterns that provide answers to ecological, evolutionary, agricultural, and biomedical questions? Bioinformatics applies high-performance computing to discover patterns in large sequence datasets. In this class students from biology and computer science work together to formulate interesting biological questions and to design algorithms and computational experiments to answer them. To register for this course students must satisfy either the biology or computer science prerequisites, but not both. Ms. Schwarz and Mr. Smith.
Prerequisite(s): BIOL 238 , BIOL 244 , or BIOL 248 ; CMPU 203 ; or permission of the instructor.
Two 2-hour periods.
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BIOL 355 - Ecology and Evolution of Sexual Reproduction
1 unit(s)
Sex: “nothing in life is more important, more interesting - or troublesome.” This quotation from Olivia Judson, Ph.D., (a.k.a. Dr. Tatiana) is just one recent example of the long-standing fascination that ecologists and evolutionary biologists have had with sexual reproduction. This course begins with the question: What is sex? We then examine the current status of competing hypotheses for the evolution of sex, and then turn our attention to the myriad ecological and evolutionary consequences of sexual reproduction. We consider such questions as: Why are there only two sexes? Why do males and females look and behave differently? When is it advantageous to produce more sons than daughters (or vice versa)? When is it advantageous to be a hermaphrodite or to change sex? To address such questions in a biologically rigorous way, we need to draw on a wide range of theoretical work and empirical evidence from cellular and molecular biology, genetics, developmental biology, ecology, and evolutionary biology. Mr. Schlessman.
Prerequisite(s): at least two 200-level biology courses, at least one of which is either BIOL 208 , or BIOL 226 , or BIOL 238 , or BIOL 241 , or BIOL 244 ; or permission of the instructor.
Two 2-hour periods.
Not offered in 2013/14.
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BIOL 356 - Aquatic Ecology
1 unit(s)
A consideration of freshwater, estuarine, and marine habitats that examines material and energy fluxes through aquatic systems; physiological aspects of primary production; the biogeochemical cycling of nutrients; adaptations of organisms to physical and chemical aspects of aquatic environments; biological processes that structure selected communities; and the role of aquatic habitat in global change phenomena. Mr. Pregnall.
Three 50-minute periods; one 4-hour laboratory.
Not offered in 2013/14.
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BIOL 370 - Immunology
1 unit(s)
An examination of the immune response at the cellular and molecular levels. Topics include innate immunity, the structure, function, and synthesis of antibodies; transplantation and tumor immunology; immune tolerance; allergic responses; and immune deficiency diseases. Mechanisms for recognition; communication; and cooperation between different classes of lymphocytes in producing these various responses are stressed, as are the genetic basis of immunity and the cellular definition of “self” which makes each individual unique. Mr. Esteban, Ms. Collins.
Prerequisite(s): CHEM 244 or permission of the instructor; BIOL 218 , BIOL 238 , BIOL 244 , BIOL 248 , or BIOL 272 recommended.
Two 75-minute periods.
Not offered in 2013/14.
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BIOL 379 - Conservation Paleobiology Semester Offered: Spring
1 unit(s)
(Same as ESCI 379 ) Humans currently and pervasively impact many (if not all) of Earth’s ecosystems. Two major challenges in modern conservation efforts are our lack of a well-defined baseline for pre-disturbance ecological conditions and an incomplete understanding of the natural range of variability for different systems. This discussion based course explores how paleontological data in both terrestrial and marine environments (e.g., varved lake deposits, rodent middens, marine fossil deposits, and archaeological material) can be used to help set restoration targets and inform conservation practices by filling in these knowledge gaps. We also gain experience interpreting geohistorical data, and discuss several specific case studies where the geologic record has been utilized to inform conservation planning. By the end of the course, students are aware of the range of different types of information that can be gathered from the geohistorical record (such as burn regimes and climate records, as well as inferences about paleo-diets and changing environmental conditions), the unique contributions of this record to increasing understanding of current conservation issues, and the impacts that humans have on ecosystems. Students additionally complete a semester term paper on how geohistorical records could be applied to mitigate a conservation problem, and present their findings and suggestions to the class. Ms. Kosloski.
One 3-hour period.
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BIOL 381 - Topics in Ecosystem Ecology - Ecosystem Structure and Function Semester Offered: Spring
1 unit(s)
(Same as ENST 381 ) Ecosystems are complex systems, where biotic and abiotic factors interact to create the world we see around us. Understanding the nature of ecosystems is fundamental to understanding how disturbance and change in a dynamic world will influence ecosystem stability. This is especially critical as we enter the Anthropocene; a time in our planets history where one species, modern humans, dominate. Major changes brought about by increased human activity include changing climate regimes, invasive species spread and biodiversity loss. This course explores how ecosystems, both aquatic and terrestrial, are assembled (structured) and how different ecosystems process energy and matter (function). We use our understanding of structure and function to explore how different ecosystems respond to changes in the environment (including climate change, invasive species introductions, loss of biodiversity and pollution). A class project will explore an ecosystem scale problem, and students will develop a plan for effectively communicating the scientific understanding of the problem to multiple stakeholders. Ms. Christenson.
Prerequisite(s): BIOL 241 .
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BIOL 383 - Hormones and Behavior Semester Offered: Spring
1 unit(s)
This course is a comparative examination of hormones and behavior in animals. We take an evolutionary approach to this topic by emphasizing (1) the common selective pressures that act on all animals and the common hormonal and behavioral responses to these pressures, and (2) how extreme selective pressures drive the evolution of unique mechanisms in the field of behavioral endocrinology. Half lecture, half student led discussions from the primary literature. Ms. Duncan, Ms. Gall.
Prerequisite(s): two units of 200-level biology.
Two 75-minute periods.
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BIOL 384 - The Ecology of Adaptive Radiations Semester Offered: Fall
1 unit(s)
This course explores the causes of adaptive radiation, possibly the most common syndrome of proliferation of taxa, through evidence that has accumulated since the formulation of the theory. The course reviews the ecological theory of adaptive radiation, the progress of adaptive radiation and phenotypic evolution, the origins of ecological diversity, divergent natural selection between environments, the ecological basis of speciation, and ecological opportunity. Primary literature is used to develop a richer understanding of the theory of adaptive radiation, whose origins trace back to Darwin (1859). Mr. Proudfoot.
Prerequisite(s): two units of 200-level Biology courses.
Two 75-minute periods.
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BIOL 385 - Mad Dogs, Vampires and Zombie Ants: Behavior Mediating Infections
1 unit(s)
(Same as PSYC 385 ) Viruses, bacteria and parasites use host organisms to complete their lifecycle. These infectious agents are masters of host manipulation, able to hijack host processes to replicate and transmit to the next host. While we tend to think of infections as just making us sick, they are also capable of changing our behavior. In fact, many infectious agents are able to mediate host behavior in ways that can enhance transmission of the disease. In this inquiry driven course we explore the process of host behavior mediation by infectious agents, combining aspects of multiple fields including infectious disease microbiology, neurobiology, epidemiology and animal behavior. Mathematical models and computer simulations are used to address questions that arise from class discussion. Mr. Esteban and Mr. Holloway.
Prerequisite(s): two 200-level biology courses, or Psychology Research Methods Course and either PSYC 241 or PSYC 243 , or one 200-level biology course and either NEUR 201 or PSYC 241 , or CMPU 250 and one of the previously listed courses.
One 3-hour period.
Not offered in 2013/14.
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BIOL 387 - Symbiotic Interactions
1 unit(s)
From the evolution of eukaryotic cells to the creation of entire ecosystems, endosymbiosis is a driving force in biology. This course provides an integrative perspective on host-symbiont interactions in diverse endosymbioses. We spend the first half of the semester examining the critical roles of symbiosis in ecology, evolution, and human systems. Then, we examine the underlying cellular and molecular processes that lead to an integrated host-symbiont partnership, for example mechanisms of host-symbiont recognition, regulation of nutrient exchange, and genomic interactions. Ms. Schwarz.
Prerequisite(s): two 200-level Biology courses, including one of the following: BIOL 205 , BIOL 218 , BIOL 238 , BIOL 244 , BIOL 248 .
Two 2-hour periods.
Not offered in 2013/14.
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BIOL 388 - Virology Semester Offered: Spring
1 unit(s)
Viruses cause significant diseases in humans, such as AIDS, influenza, and ebola. On the edge between living and non-living things, viruses invade, take over and alter cells in order to reproduce and transmit. Virus structure, replication and pathogenesis, major viral diseases, the immune response to viruses, and vaccination are major topics of discussion. Mr. Esteban.
Prerequisite(s): two units of 200-level biology, including one of BIOL 205 , BIOL 218 , BIOL 238 , BIOL 244 , BIOL 248 , BIOL 272 ; or permission of the instructor.
Two 2-hour periods.
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BIOL 389 - Sensory Ecology Semester Offered: Spring
1 unit(s)
There are many behaviors that are critical to the survival and reproduction of animals including finding food, avoiding predators, attracting mates, and raising offspring. The ability to successfully engage in these behaviors is dependent on the ability of organisms to acquire and respond to information in their environment. In this course we will discuss the concept of information, the types of information available in the environment, the diversity of sensory systems animals have evolved to exploit that information, and how sensory information and processing influence behavior. Sensory ecology is a highly interdisciplinary field and we will make use of mathematical, physical, chemical and biological principals. The class will be divided among traditional lectures, student led discussions of the primary literature, and hands-on experiences with sensory ecology data collection and analysis. Ms. Gall.
Prerequisite(s): two 200-level courses, with at least one of the following: BIOL 226 , BIOL 228 , BIOL 241 or NEUR 201 .
Two 75-minute periods.
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BIOL 399 - Senior Independent Work Semester Offered: Fall or Spring
1/2 or 1 unit(s)
Execution and analysis of a field, laboratory, or library study. The project, to be arranged with an individual instructor, is expected to have a substantial paper as its final product.
Prerequisite(s): permission of the instructor.
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Chemistry: I. Introductory |
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CHEM 108 - General Chemistry Semester Offered: Fall
0 or 1 unit(s)
This course covers fundamental aspects of general chemistry, including descriptive chemistry, chemical reactions, stoichiometry, atomic and molecular structure, states of matter, properties of solutions, thermodynamics, kinetics, equilibria, electrochemistry, and nuclear chemistry. Most of the work is quantitative in nature. The department.
Three 50-minute periods; one 4-hour laboratory.
Yearlong course 108/CHEM 109 .
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CHEM 109 - General Chemistry Semester Offered: Spring
0 or 1 unit(s)
This course covers fundamental aspects of general chemistry, including descriptive chemistry, chemical reactions, stoichiometry, atomic and molecular structure, states of matter, properties of solutions, thermodynamics, kinetics, equilibria, electrochemistry, and nuclear chemistry. Most of the work is quantitative in nature. The department.
Three 50-minute periods; one 4-hour laboratory.
Yearlong course CHEM 108 /109.
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CHEM 125 - Chemical Principles Semester Offered: Fall
0 or 1 unit(s)
This course is designed to cover the important aspects of general chemistry in one semester. Selected topics are presented at an accelerated rate for students with a strong chemistry background. The material covered includes chemical reactions, stoichiometry, atomic and molecular structure, and general chemical physics, emphasizing the fundamental aspects of and connections between equilibria, electrochemistry, thermodynamics, and kinetics. The department.
Three 50-minute periods; one 4-hour laboratory.
Sophomores, juniors, and seniors by permission of the instructor.
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CHEM 135 - Introduction to Forensic Chemistry
1 unit(s)
Forensic chemistry is the application of chemistry in the study of evidence in criminal or civil cases. This course covers underlying chemistry concepts and scientific methods as applied to the study of the forensic evidence. An introductory level of organic and polymer chemistry relevant to the study of forensic evidence is also included. Students apply modern analytical methods in the study of glass samples, fingerprints, hair and fibers, paints, drugs, trace metals, and arson investigations. The analytical methods include thin layer chromatography (TLC), infrared (IR) spectroscopy, gas chromatography, GCMS, inductively coupled plasma (ICP), and X-ray fluorescence (XRF). The format of the course is based on lectures, laboratory exercises, case study discussions, and several guest speakers on select topics in forensics science. Ms. Kaur.
Not offered in 2013/14.
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CHEM 145 - Chemistry Research Techniques
1/2 or 1 unit(s)
This course provides an introduction to modern research instrumentation and techniques in chemistry through multiple-week laboratory projects. Students get experience with the use of advanced instrumentation, and in interpreting and analyzing the experimental results. Topics may include: structural characterization with X-ray crystallography; materials analysis with scanning probe microscopies; polymer synthesis and characterization; synthesis and characterization of nanomaterials; computational chemistry to perform theoretical ab initio calculations and computer modeling of biomolecules. The department.
Prerequisite(s): CHEM 125 .
One 50-minute period; one 4-hour laboratory.
Enrollment by permission of the instructor.
Not offered in 2013/14.
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CHEM 146 - The Culture and Chemistry of Cuisine Semester Offered: Spring
1 unit(s)
(Same as STS 146 ) A basic biological need of all organisms is the ability to acquire nutrients from the environment; humans accomplish this in many creative ways. Food is an important factor in societies that influences population growth, culture, migration, and conflict. Humans discovered the science and art of food preparation, topics that are explored in this course, not in a single step but rather as an evolving process that continues to this day. This course develops the basic chemistry, biochemistry and microbiology of food preparation; explores the biochemical basis of certain nutritional practices; covers social and political aspects of foods throughout world history. It covers controversies like genetically modified organisms, the production of high-fructose corn syrup, and the historic role of food commodities such as salt, rum, and cod in the world economy. Course topics are explored through lectures, student presentations, and readings from both popular and scientific literature. The course includes a few laboratories to explore the basic science behind food preparation. Ms. Rossi, Mr. Jemiolo.
Two 75-minute periods; one 4-hour laboratory.
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CHEM 198 - Freshmen Independent Research Semester Offered: Fall or Spring
1/2 unit(s)
Students perform independent chemistry research under the direction of a faculty member of their choosing. Attendance at regularly scheduled department seminars/events is required to satisfactorily complete the course. The department.
Open only to freshmen.
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Chemistry: II. Intermediate |
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CHEM 244 - Organic Chemistry: Structure and Properties Semester Offered: Fall
0 or 1 unit(s)
An introduction to the structure of organic molecules and to their nomenclature. Among the properties of organic compounds, shape, charge distribution, and spectroscopic properties are emphasized. Laboratory work includes isolation, physical transformations and identification of organic compounds including the application of gas chromatography and infrared and nuclear magnetic resonance spectroscopy. The department.
Prerequisite(s): CHEM 109 or CHEM 125 .
Three 50-minute periods; one 4-hour laboratory.
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CHEM 245 - Organic Chemistry: Reactions and Mechanisms Semester Offered: Spring
0 or 1 unit(s)
A study of the reactions of organic compounds from a mechanistic point of view. Laboratory work includes synthesis, qualitative analysis, and quantitative investigation of reaction rates and equilibria which emphasize mechanistic considerations. The department.
Prerequisite(s): CHEM 244 .
Three 50-minute periods; one 4-hour laboratory.
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